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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015929364.1_cds_XP_016476668.1_68474
CDS Infomation

[gene=LOC107798208] [db_xref=GeneID:107798208] [protein=4-alpha-glucanotransferase DPE2-like isoform X2] [protein_id=XP_016476668.1] [location=complement(join(45379..45596,52244..52337,53689..53886,59395..59493,59598..59757,59970..60067,60206..60325,62154..62225,62314..62388,62471..62596,62699..62941,63042..63125,63211..63312,63566..63664))] [gbkey=CDS]
Sequence

ATGGCTACAAAACTTTCTATTGCCAAGAAAATTTTCACTCGTGAGAAGGAGAGCATACTA
AATTCAAAATCATTCCTGGAGTTCTTTTCTGAAAATCAGGAATGGTTGAAACCCTATGCT
GCTTTCTGTTTTCTGCGGGACTTCTTTGAAACATCTGACCGCAGCCAATGGGGCCGGTTT
TCTGAATTTTCAAAAGAGAAGCTTGAGAAACTCGTCTCAAAAGAAAGCTTGCATTATGAA
GTTGTTAGTTTTCATTACTACATCCAGTTCCATTTGCATCTACAATTATCAGAAGCTGCG
GAATACGCACGAAAGAAAGGTGTAGTGCTGAAAGGTGACCTGCCCATTGGTGTTGATAGG
AATAGTGTGGATACCTGGGTCTACCCAAATTTGTTTCGCATGAACACCTCAACTGGGGCA
CCCCCTGACTATTTTGATAAAAATGGCCAGAATTGGGGATTCCCCACTTATAATTGGGAA
GAAATGTCAAAAGACAACTATGGGTGGTGGCGTGCTCGTCTAACACAGATGGGAAAGTAC
TTTACAGCTTATAGGATTGATCACATATTGGGATTCTTCAGAATATGGGAGCTTCCAGAT
CATGCAATGACTGGCCTCTGTGGAAAATTTCGACCTTCTATTCCTATTAGTCAGGAAGAG
CTCGAGTCAGAAGGATTATGGGACTTCAACCGTCTGACCCAGCCTTATATTGGACAAGAG
CTTTTACAGGAAAAATTTGGAGCTTCTTGGACAATAATAGCTTCTACCTTTTTGAATGAA
TATCAGAAGGGCTTTTATGAGTTCAAGGTGGAATGCAATACTGAGAAGAAAATTGCATCT
GTGTTGAAGTCATTCTTGGAAACATCCATGTTGGTAGAGAGTGAAGAGAAGCTACGACGA
AAACTCTTTGATCTTCTGCAGAATGTAGCTCTAATTAAGGATCCAGAAGATCTGAGAAAG
TTTTACCCTCGCTTCAATATTGAAGACACGAAAAGCTTCAAGGATTTGGATCAGCACAGT
CAAAATGTCCTAAAAAAATTGTACTATGATTACTACTTCCAGCGACAAGAAGGTCTTTGG
CGTCAAAATGCTTTGAAAACTCTGCCTGTTCTTTTGAACTCATCAAATATGCTCGCTTGT
GGGGAAGACCTTGGCCTAATTCCTTCCTGTGTTCATCCTGTGATGCAAGAATTGGGCTTA
GTAGGCTTACGCATTCAACGCATGCCAAGTGAACCTGGTCTAGAATTTGGTATTCCTTCT
CAGTACAGCTACATGACGGTTTGTGCTCCATCATGCCATGACTGTTCCACTCTACGTGCT
TGGTGGGAGGAAGATGAGGAGAGAAGGCACCGCTTTTTTCAAGCAGTCGTGGGATCCGAT
GAGTTGCCACCTGATCAATGCACTCCTGAAATTGTGCACTTTGTCTTGCGGCAGCATGTT
GAAGCTCCATCGATGTGGTCAATCTTTCCGCTCCAGGATTTGCTAGCACTCAAAGAAGAT
TACACAACGCGGTCTGCAGTGGAAGAGACAATCAATGATCCAACAAACCCAAAACATTAC
TGGCGATACCGTGTACATGTGACGATGGAATCCTTGCTTGACGATAAAGACCTCATGAAA
AAAATAAAGGATCTAGTCCGCGGGAGTGGAAGATGTTACCCTCAGAAGGATCTGGAATCA
GGTCAGGCAAATGGTGTAGGATCAGCAAAGCTGCAATTAGGGAGTGAACTCCCTCCACTG
GCACAGACAAATATAATTCCCAACAGGGAAGCTGTGGCACTTGTTTGA

Peptide Sequence

PEP ID

XP_016476668.1
PEP Infomation

PREDICTED: 4-alpha-glucanotransferase DPE2-like isoform X2 [Nicotiana tabacum]
Sequence

MATKLSIAKKIFTREKESILNSKSFLEFFSENQEWLKPYAAFCFLRDFFETSDRSQWGRF
SEFSKEKLEKLVSKESLHYEVVSFHYYIQFHLHLQLSEAAEYARKKGVVLKGDLPIGVDR
NSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYGWWRARLTQMGKY
FTAYRIDHILGFFRIWELPDHAMTGLCGKFRPSIPISQEELESEGLWDFNRLTQPYIGQE
LLQEKFGASWTIIASTFLNEYQKGFYEFKVECNTEKKIASVLKSFLETSMLVESEEKLRR
KLFDLLQNVALIKDPEDLRKFYPRFNIEDTKSFKDLDQHSQNVLKKLYYDYYFQRQEGLW
RQNALKTLPVLLNSSNMLACGEDLGLIPSCVHPVMQELGLVGLRIQRMPSEPGLEFGIPS
QYSYMTVCAPSCHDCSTLRAWWEEDEERRHRFFQAVVGSDELPPDQCTPEIVHFVLRQHV
EAPSMWSIFPLQDLLALKEDYTTRSAVEETINDPTNPKHYWRYRVHVTMESLLDDKDLMK
KIKDLVRGSGRCYPQKDLESGQANGVGSAKLQLGSELPPLAQTNIIPNREAVALV

Transcript Sequence

Gene sequence data has not been registered.